So you have a Bakflip tonneau cover on your truck and need to replace the seals. Those rubber seals are important for keeping water out of your truck bed, so worn out or damaged seals need to be replaced right away. But where can you find the right replacement seals for your Bakflip bed cover?

In this comprehensive guide, we will explore the various options for buying replacement Bakflip seals so you can get the parts you need.

Where Should I Look to Buy Replacement Seals for My Bakflip Tonneau Cover?

When it’s time to replace the seals on your Bakflip tonneau cover, you have several options to find the right parts:

Can I Buy Replacement Seals Directly from Bakflip?

The first place to check is directly with the manufacturer – Bakflip. As the maker of your truck bed cover, they offer replacement parts and seals for all of their tonneau cover models.

The benefit of ordering directly from the manufacturer is that you know the seals will be an exact fit and match for your Bakflip cover. OEM seals direct from Bakflip are guaranteed to properly fit and seal your cover.

Bakflip offers seals for the side rails, rear flap, bulkhead, and tailgate. They have the diagrams and installation instructions too, so you can easily order the right seals and replace them yourself.

What About Aftermarket Replacement Seals for Bakflip Covers?

In addition to OEM seals from Bakflip, there are also aftermarket options for replacement seals and kits from retailers that specialize in truck accessories and parts.

These aftermarket seal kits are designed to fit Bakflip covers, though always confirm the specific model your cover is. Some popular places to buy aftermarket Bakflip seals include:

RealTruck – They sell aftermarket replacement seals for Bakflip side rails, flap, bulkhead, and tailgate. RealTruck has seals to fit most Bakflip tonneau models.
etrailer – They offer a replacement rail seal kit for Bakflip covers. You need to call their customer service line to order the proper kit for your cover.
Amazon – Search Amazon for “Bakflip seals” or your cover’s model number and you can often find replacement seal kits in their towing accessories section. Always check that it fits your specific cover.
Toys For Trucks – This retailer sells a handy Bakflip service kit with seals, prep pads, tape and adhesive promoter. The kit fits multiple Bakflip models including F1, G2, HD, FiberMax, VP, Endura, CS, and CS-F1 versions.

The benefit of aftermarket seal kits is usually price – they can be a more budget-friendly option compared to OEM seals. Just be sure they specify compatibility with your particular Bakflip model.

Where Can I Find Side Rail Seals for My Bakflip Tonneau Cover?

The long rubber seals that fit into the side rails of your Bakflip cover take a lot of wear and tear. When these begin cracking or peeling away, new side rail seals are required to keep dust and moisture out of the truck bed.

Luckily, you can source replacement side rail seals from:

Bakflip directly – As the manufacturer, they offer replacement side rail seals for all current and past Bakflip models. Ordering directly from them ensures you get the perfect fit.
RealTruck – An affordable aftermarket choice, RealTruck sells replacement side rail seals for most Bakflip tonneau covers. Double check that the seal kit matches your cover’s make and model.
Amazon – Search for “Bakflip side rail seals” on Amazon to find options that are often Prime-eligible for quick shipping. Compare your cover details to the product info for fit.
Local auto parts stores – Check at auto parts chains near you and see if they stock aftermarket Bakflip seal kits. This allows you to get seals quickly without ordering online.

When installing new Bakflip side rail seals, carefully clean the rail channels prior to inserting the new seals. Use the provided adhesive promoter and apply the seals as directed. Press firmly into place along the full rail to ensure a tight watertight fit.

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Where to Buy Replacement Seals for the Rear Flap of My Bakflip Tonneau Cover

Over time, the rear flap seal of your Bakflip tonneau cover can wear out or get damaged. Water leaks and dust intrusion will occur if this seal is not replaced.

You have a few options to source a replacement rear flap seal:

Direct from Bakflip – As the manufacturer, they offer rear flap seals for all models of Bakflip covers. Their exact-match seals ensure a perfect fit and seal.
Aftermarket seal kits – Retailers like RealTruck and Amazon sell compatible aftermarket rear flap seals for Bakflip covers. Check that the seal matches your cover.
Auto parts stores – You may be able to find a rear seal kit for Bakflip covers at local auto parts stores. Bring your cover’s make and model info to match the seals.
DIY – It is possible to carefully peel the old seal off the rear flap and use strong adhesive to attach a generic automotive seal strip cut to fit. Use a razor knife to trim the rubber seal to size.

When installing a new rear flap seal, thoroughly clean the old adhesive off the flap and rail channels. Apply fresh adhesive promoter and firmly press the seal into place. Inspect for any gaps and re-seat the seal if needed.

What About Replacement Seals for the Bulkhead or Tailgate Ends?

On each end of your Bakflip tonneau cover you have rubber seals along the bulkhead and tailgate edges. If these bulkhead or tailgate seals get nicked or start to peel off, you’ll need to source replacements.

You can buy new bulkhead and tailgate seals for your Bakflip cover from:

Bakflip – The manufacturer provides replacement seals for both the bulkhead and tailgate ends for all Bakflip models. Their seals ensure an exact fit.
Aftermarket seal kits – Check seal kits from RealTruck, Amazon, and other retailers to see if they offer compatible bulkhead and tailgate seals for your cover.
Auto parts stores – Stores like AutoZone or O’Reilly Auto Parts may stock aftermarket Bakflip seal kits with bulkhead/tailgate seals. Bring your cover details.
Custom cutting – Use a utility knife to carefully cut generic rubber seal strip to the correct length for your bulkhead/tailgate. Adhere with weatherproof automotive tape.

Take time cleaning the old seals off and prep the surface thoroughly before applying the new tailgate and bulkhead seals. Press them firmly in place along the full length of the edge to prevent leaks.

Where Can I Find a Rail Seal Kit for My Bakflip Tonneau Cover?

Many tonneau owners look for full rail seal kits when it’s time to replace their Bakflip seals. Rail seal kits include fresh seals for both the left and right cover rails.

Here are sources for complete Bakflip rail seal kits:

Bakflip – The manufacturer offers rail seal kits for all Bakflip cover models. Their kits include custom-fit seals for both side rails.
etrailer – This online retailer provides a replacement rail seal kit for many Bakflip truck bed covers. Contact their customer service to order the right kit for your cover.
RealTruck – Check their Bakflip seal offerings to see if they sell a dual rail seal kit for your specific cover. RealTruck has kits for most models.
DIY kit – You can create your own rail seal kit by buying individually-sized left and right seals from Bakflip, RealTruck or Amazon.

When replacing the rail seals, take time to thoroughly clean the rail channels and use adhesive promoter to prep the surface. Carefully press the new seals into the clean rails for maximum adhesion and water protection.

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What’s the Best Place to Buy a Replacement Seal Kit for My Bakflip F1 Tonneau Cover?

The first-generation Bakflip F1 has several rubber seals that commonly need replacement. The best options for buying a full seal kit for a Bakflip F1 are:

Bakflip – The manufacturer offers a complete F1 seal kit with side rail, rear flap and tailgate seals. Direct from Bakflip ensures a precise fit.
Toys For Trucks – They sell a handy service kit with seals, adhesive pads and tape for the Bakflip F1 and other models. All you need for resealing.
RealTruck – Check their Bakflip seal offerings to see if they sell a dedicated kit for the F1. RealTruck has seals for most models.
Amazon – Search for “Bakflip F1 seal kit” to see if any sellers offer a full kit. Read item details closely for fit.
Custom kit – Order the F1 seals individually from Bakflip or aftermarket sellers and create your own DIY seal kit.

Take time cleaning the old F1 seals out of the rails and flap first. Use adhesive promoter before installing the new seals for optimal bonding. Press seals firmly into place.

Where to Purchase Replacement Seals for My Bakflip G2 Tonneau Cover?

The Bakflip G2 is one of the most popular folding covers. But the seals eventually wear out. Where can you find fresh seals for the G2 model?

Options for new Bakflip G2 seals include:

Bakflip – The manufacturer provides custom-fit replacement seals for the G2 side rails, rear flap, and tailgate edges.
RealTruck – An affordable source for aftermarket Bakflip seals, RealTruck offers seal kits for the G2 model. Confirm the kit fits before ordering.
Amazon – Search for “Bakflip G2 seals” and you’ll find seal kits from various third-party sellers. Compare carefully to your cover’s details.
Auto parts stores – O’Reilly Auto Parts and other major chains may carry universal Bakflip seal kits in-store that fit the G2.
DIY – Use razor blades to custom-cut seals from bulk rubber strips to replace individual G2 seals. Adhere with weatherproof tape.

Take your time removing old seals and debris from the rails and flap before installing fresh G2 seals. Apply adhesive promoter to ensure the new seals bond tightly.

What’s the Best Way to Buy Replacement Seals for My Older Model Bakflip Tonneau Cover?

Owners of older Bakflip models like the HD, FiberMax, VP, or Endura sometimes think they’re out of luck finding fresh seals. But you still have options:

Bakflip – Contact their customer service support, provide your cover details, and Bakflip can supply OEM seals for most older models too.
Aftermarket universal seals – Universal seal kits from Amazon, etrailer or RealTruck might have compatible seals for older Bakflip covers. Measure carefully to check.
Custom cutting seals – Use a utility knife and ruler to cut seals to size out of generic automotive seal strip material from any auto parts store. Adhere with weatherproof tape.
Junkyard covers – Check at local junkyards to potentially find the same older Bakflip model and salvage the seals off of it. Call ahead to yards that allow self-service parts pulling.
Sell and upgrade – If seals are unobtainable for your older cover, consider selling it and putting the money towards a new Bakflip model that has readily available seals.

Even if your Bakflip cover is 10+ years old, focus on the make, model and measurements and you can likely find compatible seals through OEM, aftermarket or custom options.

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What’s the Best DIY Approach to Making My Own Replacement Seals for a Bakflip Cover?

If you can’t source replacement seals for your Bakflip, a DIY approach is to custom-make your own:

Buy automotive seal strip material from any auto parts store. Measure and cut pieces to size using a sharp utility knife and ruler.
Use strong weatherproof automotive tape like 3M adhesive promoter to attach the custom seals. Clean all surfaces thoroughly first.
Carefully press the seals into place along the cover rails, flap, and edges. Trim excess and reattach any loose areas.
For rear flap seals, flexible EPDM rubber sheet material can be cut to size and adhered along the flap edge using adhesive promoter.
Use a marine sealant like 3M 5200 to coat the outer edge of custom seals. This provides extra water protection when curing.

DIY seals require precision cutting and careful adhesion. But with some time and effort, you can create effective seals for a fraction of the cost of OEM parts. Test for leaks after installing.

Top Tips for Replacing Seals on Your Bakflip Truck Bed Cover

When you’re ready to install new seals for your Bakflip tonneau cover, keep these pro tips in mind:

Thoroughly clean all old seal residue and debris from rails, flap, and edges where the new seals will adhere.
Use an adhesive promoter like 3M primer to prep and tackify the surface for maximum seal bonding.
Take precise measurements and confirm the new seals are an exact fit before removing backing and sticking in place.
Carefully press seals into place along the entire length of rails or edges. Re-seat any areas not fully adhered.
With the cover opened, test for water leaks and re-seal any problem spots that bead or drip when sprayed with a hose.
Apply an additional protective bead of marine sealant like 3M 5200 along the exposed outer seam of the seals.
Check your seals at least yearly and re-adhere or replace promptly when any lifting, cracks, or damage occurs.

Following these tips will allow you to get the most life from your new Bakflip seals and keep the elements out of your truck bed.

Conclusion

Keeping the seals on your Bakflip tonneau cover in good condition is essential for maximum protection of your truck bed from dust and moisture.

When your existing seals show wear, it’s important to source replacement seals promptly. As we covered, you can buy new OEM seals directly from Bakflip, or quality aftermarket seals from retailers like RealTruck, Amazon, and etrailer.

For common models like the G2 and F1, full seal kits are available. But even older Bakflip covers can be re-sealed with OEM or custom parts. Take measurements and confirm fit before purchasing.

With the right seals properly installed, your Bakflip bed cover will open, close, and seal up like new again. Just be diligent about regularly checking the seals and re-adhering or replacing as needed. Happy trucking!